Training Set: Golgi and post-Golgi Type II membrane proteins.


Yuan Z and Teasdale RD, Prediction of Golgi Type II membrane proteins based on their transmembrane domains. Bioinformatics. 2002 Aug 18(8): 1109-15.

1) Golgi non-redundant dataset
Accession number
Species
Full-name/Function
AAA83244
Bos taurus
MUCIN CORE 2 BETA 6-N-ACETYLGLUCOSAMINYLTRANSFERASE
AAD03022
C.elegans
UDP-N-ACETYLGLUCOSAMINE:A-3-D-MANNOSIDE B-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE I
AAD03023
C.elegans
UDP-N-ACETYLGLUCOSAMINE:A-3-D-MANNOSIDE B-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE I
AAD03024
C.elegans
UDP-N-ACETYLGLUCOSAMINE:ALPHA-3-D-MANNOSIDE BETA-1,2-N-ACETYL-GLUCOSAMINYLTRANSFERASE I
AAD10824
Human
BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE
AAD24888
Hamster
ALPHA (1,3) FUCOSYLTRANSFERASE 6A
AAF71273
C.elegans
UDP-GLCNAC:A-6-D-MANNOSIDE B1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
AAF74758
Rat
N-ACETYLGALACTOSAMINYLTRANSFERASE A BLOOD GROUP-LIKE ENZYME
AAF82412
Hamster
ALPHA(1,3)FUCOSYLTRANSFERASE TYPE IX
AAG42004
Mouse
HEPARIN/HEPARAN SULFATE:GLUCURONIC ACID C5 EPIMERASE
AAG48244
Human
N-ACETYLGLUCOSAMINE 6-O-SULFOTRANSFERASE GST-4BETA
BAB18535
Human
N-DEACETYLASE/N-SULFOTRANSFERASE 4
CAA10755
Drosophila
ALPHA-MANNOSIDASE II
CAB61434
Human
ALPHA 2,6-SIALYLTRANSFERASE
NP_003645
Human
CARBOHYDRATE (CHONDROITIN 6/KERATAN) SULFOTRANSFERASE 1
NP_009571
Yeast
PROBABLE TYPE II MEMBRANE PROTEIN INVOLVED IN MANNAN SYNTHESIS
NP_011257
Yeast
MANNOSYLTRANSFERASE REQUIRED FOR ADDITION OF TERMINAL MANNOSE RESIDUES TO O-LINKED OLIGOSACCHARIDES
NP_012251
Yeast
MANNOSYLTRANSFERASE THAT ADDS THE FINAL MANNOSE TO O-LINKED OLIGOSACCHARIDE CHAINS; SIMILAR TO MNN1P
NP_012349
Yeast
MANNOSYLTRANSFERASE; REQUIRED FOR FORMING AND EXTENDING THE MANNOSE BRANCHES OF THE OUTER CHAIN MANNANS
NP_012352
Yeast
MEMBER OF A CIS GOLGI COMPLEX THAT IS INVOLVED IN MANNAN SYNTHESIS
NP_013465
Yeast
GOLGI RESIDENT OF UNKNOWN FUNCTION
NP_014965
Yeast
similarity to K. LACTIS N-ACETYLGLUCOSAMINYLTRANSFERASE
O60704
Human
PROTEIN-TYROSINE SULFOTRANSFERASE 2
O77081
C.elegans
PROTEIN-TYROSINE SULFOTRANSFERASE A
P14769
Bos taurus
N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE
P15907
Human
BETA-GALACTOSIDE ALPHA-2,6-SIALYLTRANSFERASE
P16442
Human
GLYCOPROTEIN-FUCOSYLGALACTOSIDE ALPHA-GALACTOSYLTRANSFERASE
P19526
Human
GALACTOSIDE 2-L-FUCOSYLTRANSFERASE 1
P21217
Human
GALACTOSIDE 3(4)-L-FUCOSYLTRANSFERASE
P22083
Human
ALPHA-(1,3)-FUCOSYLTRANSFERASE (FUCOSYLTRANSFERASE 4)
P23642
Yeast
VANADATE RESISTANCE PROTEIN
P26572
Human
ALPHA-1,3-MANNOSYL-GLYCOPROTEIN BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE
P26725
Yeast
MANNOSYLTRANSFERASE OF KRE2 FAMILY INVOLVED IN N-LINKED GLYCOSYLATION
P27809
Yeast
GLYCOLIPID 2-ALPHA-MANNOSYLTRANSFERASE
P27810
Yeast
ALPHA-1,2 MANNOSYLTRANSFERASE KTR1
P31755
Yeast
ALPHA-1,6-MANNOSYLTRANSFERASE
P32621
Yeast
GUANOSINE DIPHOSPHATASE OF GOLGI MEMBRANE
P32629
Yeast
REQUIRED TO MAINTAIN A FUNCTIONAL GOLGI APPARATUS
P33336
Yeast
GLUCAN SYNTHASE SUBUNIT INVOLVED IN SYNTHESIS OF BETA-1,6-GLUCAN
P36044
Yeast
PROTEIN REQUIRED FOR TRANSFER OF MANNOSYLPHOSPHATE TO CORE AND OUTER CHAIN PORTIONS OF N-LINKED OLIGOSACCHARIDES
P39106
Yeast
ALPHA-1,3-MANNOSYLTRANSFERASE
P39107
Yeast
REQUIRED FOR THE ADDITION OF THE LONG ALPHA 1,6-MANNOSE BACKBONE OF THE COMPLEX MANNAN
P42857
Human
NEURON SPECIFIC PROTEIN FAMILY MEMBER 1
P45700
Mouse
PROCESSING ALPHA-1,2-MANNOSIDASE
P47124
Yeast
SIMILARITY TO YEAST ALPHA-1,6-MANNOSYLTRANSFERASE
P47759
Mouse
NEURON SPECIFIC PROTEIN FAMILY MEMBER 2
P50108
Human
MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE
P52848
Human
HEPARAN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE
P52849
Human
HEPARIN SULFATE N-DEACETYLASE/N-SULFOTRANSFERASE
P54070
Yeast
MANNOSYLTRANSFERASE KTR6
Q00973
Human
BETA-1,4 N-ACETYLGALACTOSAMINYLTRANSFERASE
Q06430
Human
N-ACETYLLACTOSAMINIDE BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE
Q09327
Human
BETA-1,4-MANNOSYL-GLYCOPROTEIN BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE
Q09328
Human
ALPHA-1,3(6)-MANNOSYLGLYCOPROTEIN BETA-1,6-N-ACETYL-GLUCOSAMINYLTRANSFERASE V
Q10469
Human
ALPHA-1,6-MANNOSYL-GLYCOPROTEIN BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE
Q10472
Human
POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE
Q10981
Human
GALACTOSIDE 2-L-FUCOSYLTRANSFERASE 2
Q10983
Rabbit
GALACTOSIDE 2-L-FUCOSYLTRANSFERASE 2
Q11126
Bovine
GALACTOSIDE 3(4)-L-FUCOSYLTRANSFERASE
Q11130
Human
ALPHA-(1,3)-FUCOSYLTRANSFERASE (FUCOSYLTRANSFERASE 7)
Q11201
Human
CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE
Q11203
Human
CMP-N-ACETYLNEURAMINATE-BETA-1,4-GALACTOSIDE ALPHA-2,3-SIALYLTRANSFERASE
Q11205
Rat
CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE
Q11206
Human
CMP-N-ACETYLNEURAMINATE-BETA-GALACTOSAMIDE-ALPHA-2,3-SIALYLTRANSFERASE
Q16706
Human
ALPHA-MANNOSIDASE II
Q28113
Bovine
GALACTOSIDE 2-L-FUCOSYLTRANSFERASE 2
Q64686
Rat
ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE
Q64689
Mouse
ALPHA-2,8-SIALYLTRANSFERASE
Q92179
Chicken
CHONDROITIN 6-SULFOTRANSFERASE
Q92182
Chicken
BETA-GALACTOSIDE ALPHA-2,6-SIALYLTRANSFERASE
Q92183
Chicken
ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE
Q92184
Chick
ALPHA-N-ACETYLGALACTOSAMINIDE ALPHA-2,6-SIALYLTRANSFERASE
Q92185
Human
ALPHA-N-ACETYL-NEURAMINNIDE ALPHA-2,8-SIALYLTRANSFERASE
Q92186
Human
ALPHA-2,8-SIALYLTRANSFERASE
Q92187
Human
ALPHA-2,8-POLYSIALYLTRANSFERASE


2) Post-Golgi non-redundant dataset
Accession number
Species
Full-name/Function
AAC23546
Rat
GAMMA GLUTAMYL TRANSPEPTIDASE-RELATED ENZYME
AAG18446
Mouse
NEPRILYSIN-LIKE PEPTIDASE ALPHA
AAG48572
Mouse
KELL PROTEIN
CAA39035
Chicken
TRANSFERRIN RECEPTOR
JC7323
Rabbit
CYCLIC ADP-RIBOSE-GENERATING CYCLASE CD38
NP_005801
Human
KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY G, MEMBER 1
NP_034783
Mouse
KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY C, MEMBER 2
NP_034784
Mouse
KILLER CELL LECTIN-LIKE RECEPTOR, SUBFAMILY D, MEMBER 1
NP_058666
Mouse
KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY G, MEMBER 1
NP_062243
Rat
ALKALINE PHOSPHODIESTERASE
O35453
Mouse
SERINE PROTEASE HEPSIN
O43451
Human
MALTASE-GLUCOAMYLASE, INTESTINAL
O62653
Shrew
SUCRASE-ISOMALTASE, INTESTINAL
O75106
Human
RETINA-SPECIFIC COPPER AMINE OXIDASE PRECURSOR
O75896
Human
FUS1 PROTEIN
P02707
Chicken
HEPATIC LECTIN
P02786
Human
TRANSFERRIN RECEPTOR PROTEIN
P04441
Mouse
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, GAMMA CHAIN
P06734
Human
LOW AFFINITY IMMUNOGLOBULIN EPSILON FC RECEPTOR
P06802
Mouse
ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE 1
P07307
Human
ASIALOGLYCOPROTEIN RECEPTOR 2
P07768
Rabbit
SUCRASE-ISOMALTASE, INTESTINAL
P07861
Rat
NEPRILYSIN
P08290
Rat
ASIALOGLYCOPROTEIN RECEPTOR R2/3
P10716
Rat
KUPFFER CELL RECEPTOR
P15541
Rabbit
AMINOPEPTIDASE N
P16406
Mouse
GLUTAMYL AMINOPEPTIDASE
P21757
Human
MACROPHAGE SCAVENGER RECEPTOR TYPES I AND II
P21855
Mouse
B-CELL DIFFERENTIATION ANTIGEN LYB-2
P21964
Human
CATECHOL O-METHYLTRANSFERASE, MEMBRANE-BOUND FORM (
P22411
Porcine
DIPEPTIDYL PEPTIDASE IV
P26715
Human
NKG2-A/NKG2-B TYPE II INTEGRAL MEMBRANE PROTEIN
P26717
Human
NKG2-C TYPE II INTEGRAL MEMBRANE PROTEIN
P26718
Human
NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN
P27471
Rat
NATURAL KILLER CELL SURFACE PROTEIN P1-3.2.3
P27615
Rat
LYSOSOME MEMBRANE PROTEIN II
P27812
Mouse
NATURAL KILLER CELL SURFACE PROTEIN P1-34
P28907
Human
ADP-RIBOSYL CYCLASE 1
P34927
Mouse
ASIALOGLYCOPROTEIN RECEPTOR 1
P36027
Yeast
MATING PROCESS PROTEIN MID2
P42658
Human
DIPEPTIDYL PEPTIDASE IV LIKE PROTEIN
P49300
Mouse
MACROPHAGE ASIALOGLYCOPROTEIN-BINDING PROTEIN
P56729
Porcine
SUCRASE-ISOMALTASE, INTESTINAL
P78562
Human
PHOSPHATE REGULATING NEUTRAL ENDOPEPTIDASE
Q04609
Human
FOLATE HYDROLASE (PROSTATE-SPECIFIC MEMBRANE ANTIGEN 1)
Q07108
Human
EARLY ACTIVATION ANTIGEN CD69
Q10589
Human
BONE MARROW STROMAL ANTIGEN 2
Q10737
H. contortus
AMINOPEPTIDASE N
Q29026
Porcine
BM88 ANTIGEN
Q60651
Mouse
KILLER CELL LECTIN-LIKE RECEPTOR 4
Q60928
Mouse
GAMMA-GLUTAMYLTRANSPEPTIDASE PRECURSOR
Q64244
Rat
ADP-RIBOSYL CYCLASE 1
Q64329
Mouse
KILLER CELL LECTIN-LIKE RECEPTOR 3
Q92838
Human
ECTODYSPLASIN A